1 Response_reg#1
3-113 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:3:6.34e-41:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS13070
Response regulator OmpR family
Blautia wexlerae · GCF_001404735
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS13070Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 222 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:145:2.88e-23:220:78:77- Raw architecture: Response_reg:3:6.34e-41:113:111:111#Trans_reg_C:145:2.88e-23:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000029.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43323-45159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02653RefSeq proteinWP_019160352.1
Context group ID
GCF_001404735::NZ_CZAW01000029.1::G00035Context members
ARA71_RS13070ARA71_RS13075
Partner locus tags
ARA71_RS13070ARA71_RS13075
Partner old locus tags
ERS852523_02653ERS852523_02654
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_019160352.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7IKU7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7IKU7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS13070Primary locus identifier stored in the genes table.
Old locus tagERS852523_02653Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000029.1Sequence record reported by the local genomic context database.
Genomic interval43 323-43 991 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 323-45 159 ntGCF_001404735::NZ_CZAW01000029.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000029.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span43 323-45 159 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 323 nt45 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS13070GCF_001404735#ARA71_RS13070
RROmpRCurrent focus
43 323-43 991 nt · Forward (+)
ARA71_RS13075GCF_001404735#ARA71_RS13075
HKClassic
43 996-45 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS13070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641669
Simplified PFAM architecture for RROC_1641669
PFAM domain coverage: 186 / 222 aa (83.8%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1641669
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS13070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key