1 GGDEF#1
199-346 aa · 148 aa · 14.2% of protein
Raw token
GGDEF:199:3.24e-17:346:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS13025
Histidine kinase, Hybrid
Blautia wexlerae · GCF_001404735
ClassHKTypeHybridLength1044 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS13025Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1044 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage445 / 1044 aa (42.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1044 aa
Domain-by-domain annotation4 items
2 HisKA#2
673-739 aa · 67 aa · 6.4% of protein
Raw token
HisKA:673:0.0000000000000156:739:67:643 HATPase_c#3
788-905 aa · 118 aa · 11.3% of protein
Raw token
HATPase_c:788:3.37e-27:905:118:1094 Response_reg#4
927-1038 aa · 112 aa · 10.7% of protein
Raw token
Response_reg:927:4.28e-22:1038:116:111- Raw architecture: GGDEF:199:3.24e-17:346:157:160#HisKA:673:0.0000000000000156:739:67:64#HATPase_c:788:3.37e-27:905:118:109#Response_reg:927:4.28e-22:1038:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000029.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32140-35274Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02644RefSeq proteinWP_055152221.1
Context group ID
GCF_001404735::NZ_CZAW01000029.1::G00034Context members
ARA71_RS13025
Partner locus tags
ARA71_RS13025
Partner old locus tags
ERS852523_02644
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152221.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QL03Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QL03_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS13025Primary locus identifier stored in the genes table.
Old locus tagERS852523_02644Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000029.1Sequence record reported by the local genomic context database.
Genomic interval32 140-35 274 nt3 135 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 140-35 274 ntGCF_001404735::NZ_CZAW01000029.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000029.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span32 140-35 274 nt3 135 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 140 nt35 274 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS13025GCF_001404735#ARA71_RS13025
HKHybridCurrent focus
32 140-35 274 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS13025The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0263160
Simplified PFAM architecture for HKOC_0263160
PFAM domain coverage: 442 / 1044 aa (42.3%)
1 aa1044 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-347] | HisKA[673-739] | HATPase_c[790-904] | Response_reg[927-1038]
- Domain count: 4
- Matched identifier: HKOC_0263160
- Positioned domains: GGDEF 200-347 ; HisKA 673-739 ; HATPase_c 790-904 ; Response_reg 927-1038
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS13025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key