1 Response_reg#1
3-110 aa · 108 aa · 20.6% of protein
Raw token
Response_reg:3:1.51e-28:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS12875
Response regulator, unclassified
Blautia wexlerae · GCF_001404735
ClassRRTypeunclassifiedLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS12875Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 524 aa (27.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
482-519 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:482:0.0000000158:519:38:42- Raw architecture: Response_reg:3:1.51e-28:110:108:111#HTH_AraC:482:0.0000000158:519:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000029.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span512-3839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02613RefSeq proteinWP_055152185.1
Context group ID
GCF_001404735::NZ_CZAW01000029.1::G00033Context members
ARA71_RS12875ARA71_RS12880
Partner locus tags
ARA71_RS12875ARA71_RS12880
Partner old locus tags
ERS852523_02613ERS852523_02614
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152185.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QIT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QIT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS12875Primary locus identifier stored in the genes table.
Old locus tagERS852523_02613Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000029.1Sequence record reported by the local genomic context database.
Genomic interval512-2 086 nt1 575 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span512-3 839 ntGCF_001404735::NZ_CZAW01000029.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000029.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span512-3 839 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
512 nt3 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS12875GCF_001404735#ARA71_RS12875
RRunclassifiedCurrent focus
512-2 086 nt · Reverse (-)
ARA71_RS12880GCF_001404735#ARA71_RS12880
HKClassic
2 064-3 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS12875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0120338
Simplified PFAM architecture for RROC_0120338
PFAM domain coverage: 189 / 524 aa (36.1%)
1 aa524 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[442-519]
- Domain count: 2
- Matched identifier: RROC_0120338
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; HTH_18 442-519 ; HTH_18 442-519
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS12875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key