Gene detail

ARA71_RS10880

Response regulator, PleD_VieA family

Blautia wexlerae · GCF_001404735

Open genome Open selected cluster RefSeq

ClassRRTypePleD_VieALength564 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_001404735#ARA71_RS10880Stable P2CS identifier used across views.

GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia

Selected clusterRROC_0056735Run 7 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_242860504.1 · MIST4 ARA71_RS10880RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

Response_regGGDEFEAL

Protein length564 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage429 / 564 aa (76.1%)Merged over positioned domains only.

Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa564 aa

Domain-by-domain annotation3 items

1 Response_reg#1

22-135 aa · 114 aa · 20.2% of protein

Raw tokenResponse_reg:22:3.85e-28:135:116:111

2 GGDEF#2

152-231 aa · 80 aa · 14.2% of protein

Raw tokenGGDEF:152:7.52e-18:231:83:160

3 EAL#3

317-551 aa · 235 aa · 41.7% of protein

Raw tokenEAL:317:3.37e-70:551:237:235

Raw architecture: Response_reg:22:3.85e-28:135:116:111#GGDEF:152:7.52e-18:231:83:160#EAL:317:3.37e-70:551:237:235
Domain description: 1 Response_reg,1 GGDEF,1 EAL
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_001404735::NZ_CZAW01000022.1::G00028

Group size11 locus tag listed below.

HK / RR0 / 1Counts resolved for the local TCS neighborhood.

Context span37516-39210Genomic interval covered by the local TCS group.

Identifiers

Old locus tagERS852523_02212RefSeq proteinWP_242860504.1

Context group IDGCF_001404735::NZ_CZAW01000022.1::G00028

Context members

ARA71_RS10880

Partner locus tags

ARA71_RS10880

Partner old locus tags

ERS852523_02212

Partner protein IDs

WP_242860504.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_242860504.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagARA71_RS10880Primary locus identifier stored in the genes table.

Old locus tagERS852523_02212Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CZAW01000022.1Sequence record reported by the local genomic context database.

Genomic interval37 516-39 210 nt1 695 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span37 516-39 210 ntGCF_001404735::NZ_CZAW01000022.1::G00028

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_001404735::NZ_CZAW01000022.1::G00028

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CZAW01000022.1All displayed genes belong to this local TCS context.

Neighborhood span37 516-39 210 nt1 695 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

37 516 nt39 210 nt

+-ARA71_RS10880

Neighborhood gene cards

1 gene in the current local neighborhood.

ARA71_RS10880GCF_001404735#ARA71_RS10880

RRPleD_VieACurrent focus

37 516-39 210 nt · Reverse (-)

Old locus ERS852523_02212RefSeq WP_242860504.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

RROC_0056735RR

Run 71 sequencesid 100%cov 80%

PFAM Response_reg + GGDEF + EAL

Current gene is the representative sequence.

Selected clusterRROC_0056735Run 7 · RR · 1 sequences

Representative sequenceGCF_001404735#ARA71_RS10880The current gene is the representative for this cluster.

PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for RROC_0056735

Simplified PFAM architecture for RROC_0056735

PFAM domain coverage: 443 / 564 aa (78.5%)

1 aa564 aa

Response_regGGDEFEAL

Simplified architecture: Response_reg + GGDEF + EAL
Raw architecture: Response_reg[22-132] | GGDEF[151-248] | EAL[318-551]
Domain count: 3
Matched identifier: RROC_0056735
Positioned domains: Response_reg 22-132 ; Response_reg 22-132 ; GGDEF 151-248 ; GGDEF 151-248 ; EAL 318-551 ; EAL 318-551

Cluster members and taxonomy

Representative gene: GCF_001404735#ARA71_RS10880

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735

Assembly14207_7#34 · Scaffoldhaploid

Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae

Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia

Open genome Search genes in genome Search RR genes NCBI assembly files

Related genes

Preview from the same derived genome key