1 dCache_1#1
167-272 aa · 106 aa · 17.8% of protein
Raw token
dCache_1:167:0.0000303:272:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS07720
Histidine kinase, Classic
Blautia wexlerae · GCF_001404735
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS07720Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage354 / 594 aa (59.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
303-370 aa · 68 aa · 11.4% of protein
Raw token
HAMP:303:0.0000000000854:370:69:693 His_kinase#3
386-465 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:386:1.94e-28:465:80:804 HATPase_c#4
483-582 aa · 100 aa · 16.8% of protein
Raw token
HATPase_c:483:0.0000000101:582:109:109- Raw architecture: dCache_1:167:0.0000303:272:106:195#HAMP:303:0.0000000000854:370:69:69#His_kinase:386:1.94e-28:465:80:80#HATPase_c:483:0.0000000101:582:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000013.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51256-54251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_01559RefSeq proteinWP_055150789.1
Context group ID
GCF_001404735::NZ_CZAW01000013.1::G00017Context members
ARA71_RS07715ARA71_RS07720
Partner locus tags
ARA71_RS07715ARA71_RS07720
Partner old locus tags
ERS852523_01558ERS852523_01559
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055150789.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XLI7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XLI7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS07720Primary locus identifier stored in the genes table.
Old locus tagERS852523_01559Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000013.1Sequence record reported by the local genomic context database.
Genomic interval52 467-54 251 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 256-54 251 ntGCF_001404735::NZ_CZAW01000013.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000013.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span51 256-54 251 nt2 996 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 256 nt54 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS07715GCF_001404735#ARA71_RS07715
RRunclassified
51 256-52 434 nt · Reverse (-)
ARA71_RS07720GCF_001404735#ARA71_RS07720
HKClassicCurrent focus
52 467-54 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916185#AB5298_RS15795Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1072610
Simplified PFAM architecture for HKOC_1072610
PFAM domain coverage: 223 / 597 aa (37.4%)
1 aa597 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[327-373] | His_kinase[390-466] | HATPase_c[487-585]
- Domain count: 3
- Matched identifier: HKOC_1072610
- Positioned domains: HAMP 327-373 ; His_kinase 390-466 ; HATPase_c 487-585
Cluster members and taxonomy
Representative gene: GCF_040916185#AB5298_RS15795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key