1 Response_reg#1
6-110 aa · 105 aa · 11.3% of protein
Raw token
Response_reg:6:3.74e-25:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS07465
Response regulator, PleD_VieA family
Blautia wexlerae · GCF_001404735
ClassRRTypePleD_VieALength933 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS07465Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length933 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage479 / 933 aa (51.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa933 aa
Domain-by-domain annotation3 items
2 GGDEF#2
517-653 aa · 137 aa · 14.7% of protein
Raw token
GGDEF:517:0.0000000000089:653:151:1603 EAL#3
683-919 aa · 237 aa · 25.4% of protein
Raw token
EAL:683:3.25e-71:919:237:235- Raw architecture: Response_reg:6:3.74e-25:110:106:111#GGDEF:517:0.0000000000089:653:151:160#EAL:683:3.25e-71:919:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000012.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87677-90478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_01509RefSeq proteinWP_172678319.1
Context group ID
GCF_001404735::NZ_CZAW01000012.1::G00016Context members
ARA71_RS07465
Partner locus tags
ARA71_RS07465
Partner old locus tags
ERS852523_01509
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172678319.1Primary protein accession used for annex mappings.
UniProt accessionA0A174N2Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174N2Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS07465Primary locus identifier stored in the genes table.
Old locus tagERS852523_01509Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000012.1Sequence record reported by the local genomic context database.
Genomic interval87 677-90 478 nt2 802 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 677-90 478 ntGCF_001404735::NZ_CZAW01000012.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000012.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000012.1All displayed genes belong to this local TCS context.
Neighborhood span87 677-90 478 nt2 802 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 677 nt90 478 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS07465GCF_001404735#ARA71_RS07465
RRPleD_VieACurrent focus
87 677-90 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS07465The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0010708
Simplified PFAM architecture for RROC_0010708
PFAM domain coverage: 486 / 933 aa (52.1%)
1 aa933 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[6-118] | GGDEF[516-653] | EAL[685-919]
- Domain count: 3
- Matched identifier: RROC_0010708
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF 516-653 ; GGDEF 516-653 ; EAL 685-919 ; EAL 685-919
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS07465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key