1 HAMP#1
118-188 aa · 71 aa · 16.8% of protein
Raw token
HAMP:118:0.000000059:188:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS06985
Histidine kinase, Classic
Blautia wexlerae · GCF_001404735
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS06985Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage272 / 423 aa (64.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation3 items
2 His_kinase#2
203-282 aa · 80 aa · 18.9% of protein
Raw token
His_kinase:203:5.8e-29:282:80:803 HATPase_c#3
294-414 aa · 121 aa · 28.6% of protein
Raw token
HATPase_c:294:0.0000000000000891:414:121:109- Raw architecture: HAMP:118:0.000000059:188:71:69#His_kinase:203:5.8e-29:282:80:80#HATPase_c:294:0.0000000000000891:414:121:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000011.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80102-82160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_01408RefSeq proteinWP_173681184.1
Context group ID
GCF_001404735::NZ_CZAW01000011.1::G00015Context members
ARA71_RS06980ARA71_RS06985
Partner locus tags
ARA71_RS06980ARA71_RS06985
Partner old locus tags
ERS852523_01407ERS852523_01408
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173681184.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS06985Primary locus identifier stored in the genes table.
Old locus tagERS852523_01408Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000011.1Sequence record reported by the local genomic context database.
Genomic interval80 889-82 160 nt1 272 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 102-82 160 ntGCF_001404735::NZ_CZAW01000011.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000011.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000011.1All displayed genes belong to this local TCS context.
Neighborhood span80 102-82 160 nt2 059 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 102 nt82 160 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS06980GCF_001404735#ARA71_RS06980
RRunclassified
80 102-80 908 nt · Reverse (-)
ARA71_RS06985GCF_001404735#ARA71_RS06985
HKClassicCurrent focus
80 889-82 160 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS06985The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2236298
Simplified PFAM architecture for HKOC_2236298
PFAM domain coverage: 192 / 423 aa (45.4%)
1 aa423 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[203-281] | HATPase_c[301-413]
- Domain count: 2
- Matched identifier: HKOC_2236298
- Positioned domains: His_kinase 203-281 ; HATPase_c 301-413
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS06985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key