1 Response_reg#1
3-116 aa · 114 aa · 42.5% of protein
Raw token
Response_reg:3:3.93e-40:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS06980
Response regulator, unclassified
Blautia wexlerae · GCF_001404735
ClassRRTypeunclassifiedLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS06980Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 268 aa (71.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
170-210 aa · 41 aa · 15.3% of protein
Raw token
HTH_AraC:170:0.00000413:210:41:423 HTH_AraC#3
225-260 aa · 36 aa · 13.4% of protein
Raw token
HTH_AraC:225:0.0000000305:260:36:42- Raw architecture: Response_reg:3:3.93e-40:116:114:111#HTH_AraC:170:0.00000413:210:41:42#HTH_AraC:225:0.0000000305:260:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000011.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80102-82160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_01407RefSeq proteinWP_055150597.1
Context group ID
GCF_001404735::NZ_CZAW01000011.1::G00015Context members
ARA71_RS06980ARA71_RS06985
Partner locus tags
ARA71_RS06980ARA71_RS06985
Partner old locus tags
ERS852523_01407ERS852523_01408
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055150597.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ML18Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ML18_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS06980Primary locus identifier stored in the genes table.
Old locus tagERS852523_01407Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000011.1Sequence record reported by the local genomic context database.
Genomic interval80 102-80 908 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 102-82 160 ntGCF_001404735::NZ_CZAW01000011.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000011.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000011.1All displayed genes belong to this local TCS context.
Neighborhood span80 102-82 160 nt2 059 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 102 nt82 160 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS06980GCF_001404735#ARA71_RS06980
RRunclassifiedCurrent focus
80 102-80 908 nt · Reverse (-)
ARA71_RS06985GCF_001404735#ARA71_RS06985
HKClassic
80 889-82 160 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS06980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619796
Simplified PFAM architecture for RROC_0619796
PFAM domain coverage: 191 / 268 aa (71.3%)
1 aa268 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-116] | HTH_18[184-260]
- Domain count: 2
- Matched identifier: RROC_0619796
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; HTH_18 184-260 ; HTH_18 184-260
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key