1 HAMP#1
293-366 aa · 74 aa · 12.4% of protein
Raw token
HAMP:293:0.0000000000385:366:75:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS04400
Histidine kinase, Classic
Blautia wexlerae · GCF_001404735
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS04400Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 599 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation3 items
2 His_kinase#2
383-461 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:383:4.74e-33:461:79:803 HATPase_c#3
481-585 aa · 105 aa · 17.5% of protein
Raw token
HATPase_c:481:0.000000000000197:585:109:109- Raw architecture: HAMP:293:0.0000000000385:366:75:69#His_kinase:383:4.74e-33:461:79:80#HATPase_c:481:0.000000000000197:585:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000007.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76272-79623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_00885RefSeq proteinWP_055149804.1
Context group ID
GCF_001404735::NZ_CZAW01000007.1::G00012Context members
ARA71_RS04395ARA71_RS04400
Partner locus tags
ARA71_RS04395ARA71_RS04400
Partner old locus tags
ERS852523_00884ERS852523_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149804.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LDK0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LDK0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS04400Primary locus identifier stored in the genes table.
Old locus tagERS852523_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000007.1Sequence record reported by the local genomic context database.
Genomic interval77 824-79 623 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 272-79 623 ntGCF_001404735::NZ_CZAW01000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span76 272-79 623 nt3 352 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 272 nt79 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS04395GCF_001404735#ARA71_RS04395
RRunclassified
76 272-77 831 nt · Reverse (-)
ARA71_RS04400GCF_001404735#ARA71_RS04400
HKClassicCurrent focus
77 824-79 623 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS04400The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1057726
Simplified PFAM architecture for HKOC_1057726
PFAM domain coverage: 182 / 599 aa (30.4%)
1 aa599 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[383-459] | HATPase_c[480-584]
- Domain count: 2
- Matched identifier: HKOC_1057726
- Positioned domains: His_kinase 383-459 ; HATPase_c 480-584
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS04400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key