1 Response_reg#1
4-117 aa · 114 aa · 22.0% of protein
Raw token
Response_reg:4:1.29e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS04395
Response regulator, unclassified
Blautia wexlerae · GCF_001404735
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS04395Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 519 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-463 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:423:0.00000000356:463:41:423 HTH_AraC#3
476-513 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:476:0.000000236:513:38:42- Raw architecture: Response_reg:4:1.29e-28:117:114:111#HTH_AraC:423:0.00000000356:463:41:42#HTH_AraC:476:0.000000236:513:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000007.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76272-79623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_00884RefSeq proteinWP_055149802.1
Context group ID
GCF_001404735::NZ_CZAW01000007.1::G00012Context members
ARA71_RS04395ARA71_RS04400
Partner locus tags
ARA71_RS04395ARA71_RS04400
Partner old locus tags
ERS852523_00884ERS852523_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149802.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LFE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LFE0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS04395Primary locus identifier stored in the genes table.
Old locus tagERS852523_00884Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000007.1Sequence record reported by the local genomic context database.
Genomic interval76 272-77 831 nt1 560 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 272-79 623 ntGCF_001404735::NZ_CZAW01000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000007.1All displayed genes belong to this local TCS context.
Neighborhood span76 272-79 623 nt3 352 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 272 nt79 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS04395GCF_001404735#ARA71_RS04395
RRunclassifiedCurrent focus
76 272-77 831 nt · Reverse (-)
ARA71_RS04400GCF_001404735#ARA71_RS04400
HKClassic
77 824-79 623 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS04395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127463
Simplified PFAM architecture for RROC_0127463
PFAM domain coverage: 264 / 519 aa (50.9%)
1 aa519 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[216-286] | HTH_18[436-514]
- Domain count: 3
- Matched identifier: RROC_0127463
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; GGDEF_2 216-286 ; GGDEF_2 216-286 ; HTH_18 436-514 ; HTH_18 436-514
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS04395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key