1 PAS_3#1
437-501 aa · 65 aa · 7.2% of protein
Raw token
PAS_3:437:0.0000148:501:69:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS01880
Histidine kinase, Hybrid
Blautia wexlerae · GCF_001404735
ClassHKTypeHybridLength904 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS01880Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length904 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 904 aa (40.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa904 aa
Domain-by-domain annotation4 items
2 HisKA#2
530-596 aa · 67 aa · 7.4% of protein
Raw token
HisKA:530:0.00000000000000271:596:67:643 HATPase_c#3
645-762 aa · 118 aa · 13.1% of protein
Raw token
HATPase_c:645:3.28e-26:762:118:1094 Response_reg#4
784-901 aa · 118 aa · 13.1% of protein
Raw token
Response_reg:784:6.68e-32:901:118:111- Raw architecture: PAS_3:437:0.0000148:501:69:89#HisKA:530:0.00000000000000271:596:67:64#HATPase_c:645:3.28e-26:762:118:109#Response_reg:784:6.68e-32:901:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000003.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span96566-99280Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_00377RefSeq proteinWP_055149285.1
Context group ID
GCF_001404735::NZ_CZAW01000003.1::G00002Context members
ARA71_RS01880
Partner locus tags
ARA71_RS01880
Partner old locus tags
ERS852523_00377
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149285.1Primary protein accession used for annex mappings.
UniProt accessionA0A174K4B9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174K4B9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS01880Primary locus identifier stored in the genes table.
Old locus tagERS852523_00377Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000003.1Sequence record reported by the local genomic context database.
Genomic interval96 566-99 280 nt2 715 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 566-99 280 ntGCF_001404735::NZ_CZAW01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span96 566-99 280 nt2 715 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 566 nt99 280 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS01880GCF_001404735#ARA71_RS01880
HKHybridCurrent focus
96 566-99 280 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS01880The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0400262
Simplified PFAM architecture for HKOC_0400262
PFAM domain coverage: 299 / 904 aa (33.1%)
1 aa904 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[531-596] | HATPase_c[646-761] | Response_reg[784-900]
- Domain count: 3
- Matched identifier: HKOC_0400262
- Positioned domains: HisKA 531-596 ; HATPase_c 646-761 ; Response_reg 784-900
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS01880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key