1 Response_reg#1
2-114 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:2:2.17e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS16770
Response regulator OmpR family
Blautia obeum · GCF_001404455
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS16770Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 222 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 32.9% of protein
Raw token
Trans_reg_C:148:1.22e-33:220:76:77- Raw architecture: Response_reg:2:2.17e-32:114:113:111#Trans_reg_C:148:1.22e-33:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000034.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8874-10919Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_03401RefSeq proteinWP_055054313.1
Context group ID
GCF_001404455::NZ_CYZA01000034.1::G00044Context members
ARA27_RS16770ARA27_RS16775
Partner locus tags
ARA27_RS16770ARA27_RS16775
Partner old locus tags
ERS852395_03401ERS852395_03402
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055054313.1Primary protein accession used for annex mappings.
UniProt accessionA0A174G0I8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174G0I8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS16770Primary locus identifier stored in the genes table.
Old locus tagERS852395_03401Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000034.1Sequence record reported by the local genomic context database.
Genomic interval8 874-9 542 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 874-10 919 ntGCF_001404455::NZ_CYZA01000034.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000034.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000034.1All displayed genes belong to this local TCS context.
Neighborhood span8 874-10 919 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 874 nt10 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS16770GCF_001404455#ARA27_RS16770
RROmpRCurrent focus
8 874-9 542 nt · Forward (+)
ARA27_RS16775GCF_001404455#ARA27_RS16775
HKClassic
9 576-10 919 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS16770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641665
Simplified PFAM architecture for RROC_1641665
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1641665
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS16770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key