1 Response_reg#1
22-135 aa · 114 aa · 20.2% of protein
Raw token
Response_reg:22:3.59e-28:135:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS15450
Response regulator, PleD_VieA family
Blautia obeum · GCF_001404455
ClassRRTypePleD_VieALength564 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS15450Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage429 / 564 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation3 items
2 GGDEF#2
152-231 aa · 80 aa · 14.2% of protein
Raw token
GGDEF:152:3.43e-17:231:83:1603 EAL#3
317-551 aa · 235 aa · 41.7% of protein
Raw token
EAL:317:2.54e-71:551:237:235- Raw architecture: Response_reg:22:3.59e-28:135:116:111#GGDEF:152:3.43e-17:231:83:160#EAL:317:2.54e-71:551:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000025.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14417-16111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_03142RefSeq proteinWP_242857147.1
Context group ID
GCF_001404455::NZ_CYZA01000025.1::G00039Context members
ARA27_RS15450
Partner locus tags
ARA27_RS15450
Partner old locus tags
ERS852395_03142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242857147.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS15450Primary locus identifier stored in the genes table.
Old locus tagERS852395_03142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000025.1Sequence record reported by the local genomic context database.
Genomic interval14 417-16 111 nt1 695 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 417-16 111 ntGCF_001404455::NZ_CYZA01000025.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000025.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000025.1All displayed genes belong to this local TCS context.
Neighborhood span14 417-16 111 nt1 695 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 417 nt16 111 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS15450GCF_001404455#ARA27_RS15450
RRPleD_VieACurrent focus
14 417-16 111 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS15450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0056734
Simplified PFAM architecture for RROC_0056734
PFAM domain coverage: 443 / 564 aa (78.5%)
1 aa564 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[22-132] | GGDEF[151-248] | EAL[318-551]
- Domain count: 3
- Matched identifier: RROC_0056734
- Positioned domains: Response_reg 22-132 ; Response_reg 22-132 ; GGDEF 151-248 ; GGDEF 151-248 ; EAL 318-551 ; EAL 318-551
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS15450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key