1 Response_reg#1
4-117 aa · 114 aa · 21.8% of protein
Raw token
Response_reg:4:5.26e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS15305
Response regulator, unclassified
Blautia obeum · GCF_001404455
ClassRRTypeunclassifiedLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS15305Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 522 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
477-511 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:477:0.000000946:511:35:42- Raw architecture: Response_reg:4:5.26e-27:117:114:111#HTH_AraC:477:0.000000946:511:35:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000024.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36730-40090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_03113RefSeq proteinWP_008708161.1
Context group ID
GCF_001404455::NZ_CYZA01000024.1::G00038Context members
ARA27_RS15305ARA27_RS15310
Partner locus tags
ARA27_RS15305ARA27_RS15310
Partner old locus tags
ERS852395_03113ERS852395_03114
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008708161.1Primary protein accession used for annex mappings.
UniProt accessionA0A174F9G2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174F9G2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS15305Primary locus identifier stored in the genes table.
Old locus tagERS852395_03113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000024.1Sequence record reported by the local genomic context database.
Genomic interval36 730-38 298 nt1 569 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 730-40 090 ntGCF_001404455::NZ_CYZA01000024.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000024.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000024.1All displayed genes belong to this local TCS context.
Neighborhood span36 730-40 090 nt3 361 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 730 nt40 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS15305GCF_001404455#ARA27_RS15305
RRunclassifiedCurrent focus
36 730-38 298 nt · Reverse (-)
ARA27_RS15310GCF_001404455#ARA27_RS15310
HKClassic
38 291-40 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS15305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0123111
Simplified PFAM architecture for RROC_0123111
PFAM domain coverage: 296 / 522 aa (56.7%)
1 aa522 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[166-271] | HTH_18[435-511]
- Domain count: 3
- Matched identifier: RROC_0123111
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 166-271 ; GGDEF_2 166-271 ; HTH_18 435-511 ; HTH_18 435-511
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS15305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key