1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:1.11e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS13865
Response regulator OmpR family
Blautia obeum · GCF_001404455
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS13865Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:6.12e-23:218:76:77- Raw architecture: Response_reg:5:1.11e-28:114:110:111#Trans_reg_C:147:6.12e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000019.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3914-5483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_02826RefSeq proteinWP_055053976.1
Context group ID
GCF_001404455::NZ_CYZA01000019.1::G00032Context members
ARA27_RS13860ARA27_RS13865
Partner locus tags
ARA27_RS13860ARA27_RS13865
Partner old locus tags
ERS852395_02825ERS852395_02826
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053976.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7IG11Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7IG11_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS13865Primary locus identifier stored in the genes table.
Old locus tagERS852395_02826Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000019.1Sequence record reported by the local genomic context database.
Genomic interval4 806-5 483 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 914-5 483 ntGCF_001404455::NZ_CYZA01000019.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000019.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000019.1All displayed genes belong to this local TCS context.
Neighborhood span3 914-5 483 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 914 nt5 483 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS13860GCF_001404455#ARA27_RS13860
HKClassic
3 914-4 813 nt · Reverse (-)
ARA27_RS13865GCF_001404455#ARA27_RS13865
RROmpRCurrent focus
4 806-5 483 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS13865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1470797
Simplified PFAM architecture for RROC_1470797
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1470797
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS13865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key