1 sCache_like#1
35-129 aa · 95 aa · 17.1% of protein
Raw token
sCache_like:35:0.00000000531:129:102:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS12245
Histidine kinase, Classic
Blautia obeum · GCF_001404455
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS12245Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_8HisKAHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage307 / 555 aa (55.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation4 items
2 PAS_8#2
222-258 aa · 37 aa · 6.7% of protein
Raw token
PAS_8:222:0.0000399:258:37:653 HisKA#3
332-397 aa · 66 aa · 11.9% of protein
Raw token
HisKA:332:9.78e-18:397:66:644 HATPase_c#4
441-549 aa · 109 aa · 19.6% of protein
Raw token
HATPase_c:441:6.49e-29:549:109:109- Raw architecture: sCache_like:35:0.00000000531:129:102:114#PAS_8:222:0.0000399:258:37:65#HisKA:332:9.78e-18:397:66:64#HATPase_c:441:6.49e-29:549:109:109
- Domain description: 1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000014.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span78003-79670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_02505RefSeq proteinWP_055053802.1
Context group ID
GCF_001404455::NZ_CYZA01000014.1::G00028Context members
ARA27_RS12245
Partner locus tags
ARA27_RS12245
Partner old locus tags
ERS852395_02505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053802.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DKW1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DKW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS12245Primary locus identifier stored in the genes table.
Old locus tagERS852395_02505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000014.1Sequence record reported by the local genomic context database.
Genomic interval78 003-79 670 nt1 668 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 003-79 670 ntGCF_001404455::NZ_CYZA01000014.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000014.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000014.1All displayed genes belong to this local TCS context.
Neighborhood span78 003-79 670 nt1 668 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 003 nt79 670 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS12245GCF_001404455#ARA27_RS12245
HKClassicCurrent focus
78 003-79 670 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS12245The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1277936
Simplified PFAM architecture for HKOC_1277936
PFAM domain coverage: 223 / 555 aa (40.2%)
1 aa555 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[224-274] | HisKA[332-396] | HATPase_c[443-549]
- Domain count: 3
- Matched identifier: HKOC_1277936
- Positioned domains: PAS_8 224-274 ; HisKA 332-396 ; HATPase_c 443-549
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS12245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key