1 His_kinase#1
371-448 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:371:4.48e-28:448:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS12235
Histidine kinase, Classic
Blautia obeum · GCF_001404455
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS12235Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 577 aa (32.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
467-575 aa · 109 aa · 18.9% of protein
Raw token
HATPase_c:467:0.00000000645:575:112:109- Raw architecture: His_kinase:371:4.48e-28:448:78:80#HATPase_c:467:0.00000000645:575:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000014.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74581-77934Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_02503RefSeq proteinWP_055053800.1
Context group ID
GCF_001404455::NZ_CYZA01000014.1::G00027Context members
ARA27_RS12235ARA27_RS12240
Partner locus tags
ARA27_RS12235ARA27_RS12240
Partner old locus tags
ERS852395_02503ERS852395_02504
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053800.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DQN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DQN7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS12235Primary locus identifier stored in the genes table.
Old locus tagERS852395_02503Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000014.1Sequence record reported by the local genomic context database.
Genomic interval74 581-76 314 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 581-77 934 ntGCF_001404455::NZ_CYZA01000014.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000014.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000014.1All displayed genes belong to this local TCS context.
Neighborhood span74 581-77 934 nt3 354 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 581 nt77 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS12235GCF_001404455#ARA27_RS12235
HKClassicCurrent focus
74 581-76 314 nt · Forward (+)
ARA27_RS12240GCF_001404455#ARA27_RS12240
RRunclassified
76 351-77 934 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS12235The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1177813
Simplified PFAM architecture for HKOC_1177813
PFAM domain coverage: 187 / 577 aa (32.4%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[371-448] | HATPase_c[467-575]
- Domain count: 2
- Matched identifier: HKOC_1177813
- Positioned domains: His_kinase 371-448 ; HATPase_c 467-575
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS12235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key