1 Response_reg#1
4-117 aa · 114 aa · 22.0% of protein
Raw token
Response_reg:4:1.18e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS09720
Response regulator, unclassified
Blautia obeum · GCF_001404455
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS09720Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 519 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-463 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:423:0.00000000352:463:41:423 HTH_AraC#3
476-513 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:476:0.000000233:513:38:42- Raw architecture: Response_reg:4:1.18e-28:117:114:111#HTH_AraC:423:0.00000000352:463:41:42#HTH_AraC:476:0.000000233:513:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000009.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93911-97253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_01991RefSeq proteinWP_055053519.1
Context group ID
GCF_001404455::NZ_CYZA01000009.1::G00021Context members
ARA27_RS09715ARA27_RS09720
Partner locus tags
ARA27_RS09715ARA27_RS09720
Partner old locus tags
ERS852395_01990ERS852395_01991
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053519.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BXX9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BXX9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS09720Primary locus identifier stored in the genes table.
Old locus tagERS852395_01991Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000009.1Sequence record reported by the local genomic context database.
Genomic interval95 694-97 253 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 911-97 253 ntGCF_001404455::NZ_CYZA01000009.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000009.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000009.1All displayed genes belong to this local TCS context.
Neighborhood span93 911-97 253 nt3 343 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 911 nt97 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS09715GCF_001404455#ARA27_RS09715
HKClassic
93 911-95 701 nt · Forward (+)
ARA27_RS09720GCF_001404455#ARA27_RS09720
RRunclassifiedCurrent focus
95 694-97 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS09720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127462
Simplified PFAM architecture for RROC_0127462
PFAM domain coverage: 264 / 519 aa (50.9%)
1 aa519 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[216-286] | HTH_18[436-514]
- Domain count: 3
- Matched identifier: RROC_0127462
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; GGDEF_2 216-286 ; GGDEF_2 216-286 ; HTH_18 436-514 ; HTH_18 436-514
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS09720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key