1 GGDEF#1
138-276 aa · 139 aa · 21.1% of protein
Raw token
GGDEF:138:2.48e-38:276:151:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS06515
Response regulator, RpfG family
Blautia obeum · GCF_001404455
ClassRRTypeRpfGLength659 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS06515Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length659 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage352 / 659 aa (53.4%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa659 aa
Domain-by-domain annotation3 items
2 Response_reg#2
304-415 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:304:3.2e-30:415:113:1113 HD#3
496-596 aa · 101 aa · 15.3% of protein
Raw token
HD:496:0.00000000000433:596:101:110- Raw architecture: GGDEF:138:2.48e-38:276:151:160#Response_reg:304:3.2e-30:415:113:111#HD:496:0.00000000000433:596:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000006.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5369-7348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_01325RefSeq proteinWP_055053089.1
Context group ID
GCF_001404455::NZ_CYZA01000006.1::G00015Context members
ARA27_RS06515
Partner locus tags
ARA27_RS06515
Partner old locus tags
ERS852395_01325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053089.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZT12Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZT12_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS06515Primary locus identifier stored in the genes table.
Old locus tagERS852395_01325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000006.1Sequence record reported by the local genomic context database.
Genomic interval5 369-7 348 nt1 980 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 369-7 348 ntGCF_001404455::NZ_CYZA01000006.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000006.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000006.1All displayed genes belong to this local TCS context.
Neighborhood span5 369-7 348 nt1 980 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 369 nt7 348 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS06515GCF_001404455#ARA27_RS06515
RRRpfGCurrent focus
5 369-7 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS06515The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034977
Simplified PFAM architecture for RROC_0034977
PFAM domain coverage: 387 / 659 aa (58.7%)
1 aa659 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[137-278] | Response_reg[304-415] | HD_5[483-615]
- Domain count: 3
- Matched identifier: RROC_0034977
- Positioned domains: GGDEF 137-278 ; GGDEF 137-278 ; Response_reg 304-415 ; Response_reg 304-415 ; HD_5 483-615 ; HD_5 483-615
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS06515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key