1 Response_reg#1
4-119 aa · 116 aa · 48.9% of protein
Raw token
Response_reg:4:2.58e-16:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS06080
Response regulator LytTR family
Blautia obeum · GCF_001404455
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS06080Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 237 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-230 aa · 94 aa · 39.7% of protein
Raw token
LytTR:137:2.65e-18:230:99:98- Raw architecture: Response_reg:4:2.58e-16:119:118:111#LytTR:137:2.65e-18:230:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000005.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121373-122086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_01236RefSeq proteinWP_055053050.1
Context group ID
GCF_001404455::NZ_CYZA01000005.1::G00012Context members
ARA27_RS06080
Partner locus tags
ARA27_RS06080
Partner old locus tags
ERS852395_01236
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053050.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZIQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZIQ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS06080Primary locus identifier stored in the genes table.
Old locus tagERS852395_01236Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000005.1Sequence record reported by the local genomic context database.
Genomic interval121 373-122 086 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 373-122 086 ntGCF_001404455::NZ_CYZA01000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000005.1All displayed genes belong to this local TCS context.
Neighborhood span121 373-122 086 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 373 nt122 086 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS06080GCF_001404455#ARA27_RS06080
RRLytTRCurrent focus
121 373-122 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS06080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964680
Simplified PFAM architecture for RROC_0964680
PFAM domain coverage: 208 / 237 aa (87.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[138-229]
- Domain count: 2
- Matched identifier: RROC_0964680
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 138-229 ; LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key