1 Response_reg#1
4-116 aa · 113 aa · 54.3% of protein
Raw token
Response_reg:4:0.00000000000048:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS03310
Response regulator NarL family
Blautia obeum · GCF_001404455
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS03310Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 208 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-176 aa · 33 aa · 15.9% of protein
Raw token
HTH_LUXR:144:0.000000887:176:33:58- Raw architecture: Response_reg:4:0.00000000000048:116:113:111#HTH_LUXR:144:0.000000887:176:33:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000002.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span198648-199274Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_00674RefSeq proteinWP_055052704.1
Context group ID
GCF_001404455::NZ_CYZA01000002.1::G00009Context members
ARA27_RS03310
Partner locus tags
ARA27_RS03310
Partner old locus tags
ERS852395_00674
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055052704.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XW97Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XW97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS03310Primary locus identifier stored in the genes table.
Old locus tagERS852395_00674Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000002.1Sequence record reported by the local genomic context database.
Genomic interval198 648-199 274 nt627 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span198 648-199 274 ntGCF_001404455::NZ_CYZA01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span198 648-199 274 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 648 nt199 274 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS03310GCF_001404455#ARA27_RS03310
RRNarLCurrent focus
198 648-199 274 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS03310The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2058664
Simplified PFAM architecture for RROC_2058664
PFAM domain coverage: 146 / 208 aa (70.2%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[144-176]
- Domain count: 2
- Matched identifier: RROC_2058664
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 144-176 ; GerE 144-176
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS03310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key