1 HAMP#1
188-254 aa · 67 aa · 13.6% of protein
Raw token
HAMP:188:0.0000000000823:254:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS02890
Histidine kinase, Classic
Blautia obeum · GCF_001404455
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS02890Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 493 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:285:5.46e-30:364:80:803 HATPase_c#3
383-490 aa · 108 aa · 21.9% of protein
Raw token
HATPase_c:383:0.000000000000148:490:108:109- Raw architecture: HAMP:188:0.0000000000823:254:67:69#His_kinase:285:5.46e-30:364:80:80#HATPase_c:383:0.000000000000148:490:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102987-106090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_00588RefSeq proteinWP_055052673.1
Context group ID
GCF_001404455::NZ_CYZA01000002.1::G00008Context members
ARA27_RS02885ARA27_RS02890
Partner locus tags
ARA27_RS02885ARA27_RS02890
Partner old locus tags
ERS852395_00587ERS852395_00588
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055052673.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XME4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XME4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS02890Primary locus identifier stored in the genes table.
Old locus tagERS852395_00588Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000002.1Sequence record reported by the local genomic context database.
Genomic interval104 609-106 090 nt1 482 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 987-106 090 ntGCF_001404455::NZ_CYZA01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span102 987-106 090 nt3 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 987 nt106 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS02885GCF_001404455#ARA27_RS02885
RRunclassified
102 987-104 582 nt · Reverse (-)
ARA27_RS02890GCF_001404455#ARA27_RS02890
HKClassicCurrent focus
104 609-106 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS02890The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1515367
Simplified PFAM architecture for HKOC_1515367
PFAM domain coverage: 233 / 493 aa (47.3%)
1 aa493 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-254] | His_kinase[285-361] | HATPase_c[384-490]
- Domain count: 3
- Matched identifier: HKOC_1515367
- Positioned domains: HAMP 206-254 ; His_kinase 285-361 ; HATPase_c 384-490
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key