1 KdpD#1
25-233 aa · 209 aa · 23.4% of protein
Raw token
KdpD:25:2.81e-136:233:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS06435
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength892 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS06435Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length892 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 892 aa (43.7%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa892 aa
Domain-by-domain annotation3 items
2 HisKA#2
667-734 aa · 68 aa · 7.6% of protein
Raw token
HisKA:667:0.000000000000545:734:68:643 HATPase_c#3
777-889 aa · 113 aa · 12.7% of protein
Raw token
HATPase_c:777:3.07e-28:889:113:109- Raw architecture: KdpD:25:2.81e-136:233:209:210#HisKA:667:0.000000000000545:734:68:64#HATPase_c:777:3.07e-28:889:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000009.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51432-54835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_01298RefSeq proteinWP_055152049.1
Context group ID
GCF_001404335::NZ_CYZU01000009.1::G00024Context members
ARB69_RS06435ARB69_RS06440
Partner locus tags
ARB69_RS06435ARB69_RS06440
Partner old locus tags
ERS852491_01298ERS852491_01299
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152049.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CDB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CDB2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS06435Primary locus identifier stored in the genes table.
Old locus tagERS852491_01298Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000009.1Sequence record reported by the local genomic context database.
Genomic interval51 432-54 110 nt2 679 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 432-54 835 ntGCF_001404335::NZ_CYZU01000009.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000009.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000009.1All displayed genes belong to this local TCS context.
Neighborhood span51 432-54 835 nt3 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 432 nt54 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS06435GCF_001404335#ARB69_RS06435
HKClassicCurrent focus
51 432-54 110 nt · Forward (+)
ARB69_RS06440GCF_001404335#ARB69_RS06440
RROmpR
54 107-54 835 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS06435The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0425542
Simplified PFAM architecture for HKOC_0425542
PFAM domain coverage: 612 / 892 aa (68.6%)
1 aa892 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[25-233] | Usp[249-365] | DUF4118[400-506] | HisKA[667-734] | HATPase_c[778-888]
- Domain count: 5
- Matched identifier: HKOC_0425542
- Positioned domains: KdpD 25-233 ; Usp 249-365 ; DUF4118 400-506 ; HisKA 667-734 ; HATPase_c 778-888
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS06435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key