1 dCache_1#1
47-281 aa · 235 aa · 40.0% of protein
Raw token
dCache_1:47:0.000012:281:245:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS05520
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS05520Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage413 / 587 aa (70.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-463 aa · 78 aa · 13.3% of protein
Raw token
His_kinase:386:6.96e-28:463:78:803 HATPase_c#3
479-578 aa · 100 aa · 17.0% of protein
Raw token
HATPase_c:479:0.000000000171:578:109:109- Raw architecture: dCache_1:47:0.000012:281:245:195#His_kinase:386:6.96e-28:463:78:80#HATPase_c:479:0.000000000171:578:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000008.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8386-11662Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_01115RefSeq proteinWP_055151761.1
Context group ID
GCF_001404335::NZ_CYZU01000008.1::G00021Context members
ARB69_RS05515ARB69_RS05520
Partner locus tags
ARB69_RS05515ARB69_RS05520
Partner old locus tags
ERS852491_01114ERS852491_01115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055151761.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BU03Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BU03_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS05520Primary locus identifier stored in the genes table.
Old locus tagERS852491_01115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000008.1Sequence record reported by the local genomic context database.
Genomic interval9 899-11 662 nt1 764 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 386-11 662 ntGCF_001404335::NZ_CYZU01000008.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000008.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000008.1All displayed genes belong to this local TCS context.
Neighborhood span8 386-11 662 nt3 277 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 386 nt11 662 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS05515GCF_001404335#ARB69_RS05515
RRunclassified
8 386-9 909 nt · Reverse (-)
ARB69_RS05520GCF_001404335#ARB69_RS05520
HKClassicCurrent focus
9 899-11 662 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS05520The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1126301
Simplified PFAM architecture for HKOC_1126301
PFAM domain coverage: 175 / 587 aa (29.8%)
1 aa587 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[386-463] | HATPase_c[482-578]
- Domain count: 2
- Matched identifier: HKOC_1126301
- Positioned domains: His_kinase 386-463 ; HATPase_c 482-578
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS05520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key