1 HisKA#1
95-155 aa · 61 aa · 18.5% of protein
Raw token
HisKA:95:0.00000000236:155:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS05055
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength329 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS05055Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length329 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 329 aa (50.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa329 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-307 aa · 106 aa · 32.2% of protein
Raw token
HATPase_c:202:1.76e-20:307:106:109- Raw architecture: HisKA:95:0.00000000236:155:61:64#HATPase_c:202:1.76e-20:307:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000007.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38443-40117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_01019RefSeq proteinWP_050639451.1
Context group ID
GCF_001404335::NZ_CYZU01000007.1::G00016Context members
ARB69_RS05055ARB69_RS05060
Partner locus tags
ARB69_RS05055ARB69_RS05060
Partner old locus tags
ERS852491_01019ERS852491_01020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050639451.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BH94Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BH94_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS05055Primary locus identifier stored in the genes table.
Old locus tagERS852491_01019Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000007.1Sequence record reported by the local genomic context database.
Genomic interval38 443-39 432 nt990 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 443-40 117 ntGCF_001404335::NZ_CYZU01000007.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000007.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span38 443-40 117 nt1 675 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 443 nt40 117 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS05055GCF_001404335#ARB69_RS05055
HKClassicCurrent focus
38 443-39 432 nt · Reverse (-)
ARB69_RS05060GCF_001404335#ARB69_RS05060
RROmpR
39 425-40 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS04490Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2858109
Simplified PFAM architecture for HKOC_2858109
PFAM domain coverage: 167 / 329 aa (50.8%)
1 aa329 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[94-155] | HATPase_c[203-307]
- Domain count: 2
- Matched identifier: HKOC_2858109
- Positioned domains: HisKA 94-155 ; HATPase_c 203-307
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS04490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key