1 HAMP#1
171-240 aa · 70 aa · 14.9% of protein
Raw token
HAMP:171:0.00000000000621:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS04835
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS04835Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 471 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.7% of protein
Raw token
HisKA:245:0.00000000000016:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:356:4.33e-30:464:109:109- Raw architecture: HAMP:171:0.00000000000621:240:70:69#HisKA:245:0.00000000000016:304:60:64#HATPase_c:356:4.33e-30:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000006.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125661-127818Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00975RefSeq proteinWP_050640713.1
Context group ID
GCF_001404335::NZ_CYZU01000006.1::G00015Context members
ARB69_RS04830ARB69_RS04835
Partner locus tags
ARB69_RS04830ARB69_RS04835
Partner old locus tags
ERS852491_00974ERS852491_00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050640713.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BCR5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BCR5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS04835Primary locus identifier stored in the genes table.
Old locus tagERS852491_00975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000006.1Sequence record reported by the local genomic context database.
Genomic interval126 403-127 818 nt1 416 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 661-127 818 ntGCF_001404335::NZ_CYZU01000006.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000006.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000006.1All displayed genes belong to this local TCS context.
Neighborhood span125 661-127 818 nt2 158 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 661 nt127 818 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS04830GCF_001404335#ARB69_RS04830
RROmpR
125 661-126 362 nt · Forward (+)
ARB69_RS04835GCF_001404335#ARB69_RS04835
HKClassicCurrent focus
126 403-127 818 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS11515Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1708009
Simplified PFAM architecture for HKOC_1708009
PFAM domain coverage: 216 / 471 aa (45.9%)
1 aa471 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-239] | HisKA[246-307] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1708009
- Positioned domains: HAMP 195-239 ; HisKA 246-307 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS11515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key