1 PAS_3#1
422-501 aa · 80 aa · 8.6% of protein
Raw token
PAS_3:422:0.000000119:501:81:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS04515
Histidine kinase, Hybrid
Faecalicatena contorta · GCF_001404335
ClassHKTypeHybridLength929 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS04515Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length929 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage379 / 929 aa (40.8%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa929 aa
Domain-by-domain annotation4 items
2 HisKA#2
538-604 aa · 67 aa · 7.2% of protein
Raw token
HisKA:538:2.23e-17:604:67:643 HATPase_c#3
651-765 aa · 115 aa · 12.4% of protein
Raw token
HATPase_c:651:8.38e-31:765:115:1094 Response_reg#4
805-921 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:805:4.83e-30:921:117:111- Raw architecture: PAS_3:422:0.000000119:501:81:89#HisKA:538:2.23e-17:604:67:64#HATPase_c:651:8.38e-31:765:115:109#Response_reg:805:4.83e-30:921:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000006.1::G00014
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span49237-54471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00907RefSeq proteinWP_055151405.1
Context group ID
GCF_001404335::NZ_CYZU01000006.1::G00014Context members
ARB69_RS04510ARB69_RS04515
Partner locus tags
ARB69_RS04510ARB69_RS04515
Partner old locus tags
ERS852491_00906ERS852491_00907
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055151405.1Primary protein accession used for annex mappings.
UniProt accessionA0A174B3H3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174B3H3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS04515Primary locus identifier stored in the genes table.
Old locus tagERS852491_00907Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000006.1Sequence record reported by the local genomic context database.
Genomic interval51 682-54 471 nt2 790 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 237-54 471 ntGCF_001404335::NZ_CYZU01000006.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000006.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000006.1All displayed genes belong to this local TCS context.
Neighborhood span49 237-54 471 nt5 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 237 nt54 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS04510GCF_001404335#ARB69_RS04510
HKHybrid
49 237-51 630 nt · Reverse (-)
ARB69_RS04515GCF_001404335#ARB69_RS04515
HKHybridCurrent focus
51 682-54 471 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS04515The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0354273
Simplified PFAM architecture for HKOC_0354273
PFAM domain coverage: 299 / 929 aa (32.2%)
1 aa929 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[538-604] | HATPase_c[651-768] | Response_reg[805-918]
- Domain count: 3
- Matched identifier: HKOC_0354273
- Positioned domains: HisKA 538-604 ; HATPase_c 651-768 ; Response_reg 805-918
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS04515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key