1 Response_reg#1
16-97 aa · 82 aa · 15.7% of protein
Raw token
Response_reg:16:4.07e-16:97:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS03890
Response regulator RpfG family
Faecalicatena contorta · GCF_001404335
ClassRRTypeRpfGLength523 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404335#ARB69_RS03890Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 523 aa (38.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation2 items
2 HD#2
335-454 aa · 120 aa · 22.9% of protein
Raw token
HD:335:1.8e-19:454:122:110- Raw architecture: Response_reg:16:4.07e-16:97:82:111#HD:335:1.8e-19:454:122:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404335::NZ_CYZU01000005.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59928-61499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00782RefSeq proteinWP_055151215.1
Context group ID
GCF_001404335::NZ_CYZU01000005.1::G00011Context members
ARB69_RS03890
Partner locus tags
ARB69_RS03890
Partner old locus tags
ERS852491_00782
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055151215.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ANP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ANP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS03890Primary locus identifier stored in the genes table.
Old locus tagERS852491_00782Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000005.1Sequence record reported by the local genomic context database.
Genomic interval59 928-61 499 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 928-61 499 ntGCF_001404335::NZ_CYZU01000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000005.1All displayed genes belong to this local TCS context.
Neighborhood span59 928-61 499 nt1 572 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 928 nt61 499 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB69_RS03890GCF_001404335#ARB69_RS03890
RRRpfGCurrent focus
59 928-61 499 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS03890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + DUF3369 + HD3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0121713
Simplified PFAM architecture for RROC_0121713
PFAM domain coverage: 396 / 523 aa (75.7%)
1 aa523 aa
Response_regDUF3369HD
- Simplified architecture: Response_reg + DUF3369 + HD
- Raw architecture: Response_reg[16-123] | DUF3369[127-293] | HD[334-454]
- Domain count: 3
- Matched identifier: RROC_0121713
- Positioned domains: Response_reg 16-123 ; Response_reg 16-123 ; DUF3369 127-293 ; DUF3369 127-293 ; HD 334-454 ; HD 334-454
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS03890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key