1 Response_reg#1
4-110 aa · 107 aa · 21.0% of protein
Raw token
Response_reg:4:1.08e-22:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS01140
Response regulator, unclassified
Faecalicatena contorta · GCF_001404335
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404335#ARB69_RS01140Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 509 aa (35.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
399-440 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:399:0.000000451:440:42:423 HTH_AraC#3
459-490 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:459:0.00000000177:490:32:42- Raw architecture: Response_reg:4:1.08e-22:110:107:111#HTH_AraC:399:0.000000451:440:42:42#HTH_AraC:459:0.00000000177:490:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404335::NZ_CYZU01000002.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5915-7444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00225RefSeq proteinWP_055150123.1
Context group ID
GCF_001404335::NZ_CYZU01000002.1::G00003Context members
ARB69_RS01140
Partner locus tags
ARB69_RS01140
Partner old locus tags
ERS852491_00225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055150123.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YWY7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YWY7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS01140Primary locus identifier stored in the genes table.
Old locus tagERS852491_00225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000002.1Sequence record reported by the local genomic context database.
Genomic interval5 915-7 444 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 915-7 444 ntGCF_001404335::NZ_CYZU01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span5 915-7 444 nt1 530 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 915 nt7 444 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB69_RS01140GCF_001404335#ARB69_RS01140
RRunclassifiedCurrent focus
5 915-7 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS01140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147414
Simplified PFAM architecture for RROC_0147414
PFAM domain coverage: 190 / 509 aa (37.3%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[413-491]
- Domain count: 2
- Matched identifier: RROC_0147414
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 413-491 ; HTH_18 413-491
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS01140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key