1 HisKA#1
259-325 aa · 67 aa · 13.5% of protein
Raw token
HisKA:259:0.000000000000934:325:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY67_RS08650
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_001281305
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001281305#RY67_RS08650Stable P2CS identifier used across views.
GenomeGCF_001281305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 498 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
388-498 aa · 111 aa · 22.3% of protein
Raw token
HATPase_c:388:0.0000000000000419:498:111:109- Raw architecture: HisKA:259:0.000000000000934:325:67:64#HATPase_c:388:0.0000000000000419:498:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001281305::NZ_CP010411.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2043117-2045284Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY67_1881RefSeq proteinWP_060620987.1
Context group ID
GCF_001281305::NZ_CP010411.1::G00017Context members
RY67_RS08650RY67_RS08655
Partner locus tags
RY67_RS08650RY67_RS08655
Partner old locus tags
RY67_1881RY67_1882
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060620987.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4LW56Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4LW56_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY67_RS08650Primary locus identifier stored in the genes table.
Old locus tagRY67_1881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010411.1Sequence record reported by the local genomic context database.
Genomic interval2 043 117-2 044 613 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 043 117-2 045 284 ntGCF_001281305::NZ_CP010411.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281305::NZ_CP010411.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010411.1All displayed genes belong to this local TCS context.
Neighborhood span2 043 117-2 045 284 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 043 117 nt2 045 284 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RY67_RS08650GCF_001281305#RY67_RS08650
HKClassicCurrent focus
2 043 117-2 044 613 nt · Reverse (-)
RY67_RS08655GCF_001281305#RY67_RS08655
RROmpR
2 044 610-2 045 284 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS08650The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487547
Simplified PFAM architecture for HKOC_1487547
PFAM domain coverage: 168 / 498 aa (33.7%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-325] | HATPase_c[389-490]
- Domain count: 2
- Matched identifier: HKOC_1487547
- Positioned domains: HisKA 260-325 ; HATPase_c 389-490
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS08650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001281305
AssemblyASM128130v1 · Complete Genomehaploid
Genome composition2 578 115 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key