1 Response_reg#1
23-130 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:23:3.7e-30:130:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY67_RS08295
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_001281305
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001281305#RY67_RS08295Stable P2CS identifier used across views.
GenomeGCF_001281305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 240 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
165-237 aa · 73 aa · 30.4% of protein
Raw token
Trans_reg_C:165:3.85e-23:237:75:77- Raw architecture: Response_reg:23:3.7e-30:130:111:111#Trans_reg_C:165:3.85e-23:237:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001281305::NZ_CP010411.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1973726-1975740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY67_1800RefSeq proteinWP_060620946.1
Context group ID
GCF_001281305::NZ_CP010411.1::G00015Context members
RY67_RS08295RY67_RS08300
Partner locus tags
RY67_RS08295RY67_RS08300
Partner old locus tags
RY67_1800RY67_1801
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060620946.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY67_RS08295Primary locus identifier stored in the genes table.
Old locus tagRY67_1800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010411.1Sequence record reported by the local genomic context database.
Genomic interval1 973 726-1 974 391 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 973 726-1 975 740 ntGCF_001281305::NZ_CP010411.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281305::NZ_CP010411.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010411.1All displayed genes belong to this local TCS context.
Neighborhood span1 973 726-1 975 740 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 973 726 nt1 975 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RY67_RS08295GCF_001281305#RY67_RS08295
RROmpRCurrent focus
1 973 726-1 974 391 nt · Forward (+)
RY67_RS08300GCF_001281305#RY67_RS08300
HKClassic
1 974 451-1 975 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS08295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0884839
Simplified PFAM architecture for RROC_0884839
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0884839
- Positioned domains: Response_reg 23-130 ; Response_reg 23-130 ; Trans_reg_C 165-236 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS08295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001281305
AssemblyASM128130v1 · Complete Genomehaploid
Genome composition2 578 115 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key