1 Response_reg#1
18-86 aa · 69 aa · 34.3% of protein
Raw token
Response_reg:18:0.000000000000429:86:69:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY67_RS05440
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_001281305
ClassRRTypeNarLLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001281305#RY67_RS05440Stable P2CS identifier used across views.
GenomeGCF_001281305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage123 / 201 aa (61.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-194 aa · 54 aa · 26.9% of protein
Raw token
HTH_LUXR:141:9.13e-20:194:54:58- Raw architecture: Response_reg:18:0.000000000000429:86:69:111#HTH_LUXR:141:9.13e-20:194:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001281305::NZ_CP010411.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1288572-1289177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY67_1167RefSeq proteinWP_235626017.1
Context group ID
GCF_001281305::NZ_CP010411.1::G00009Context members
RY67_RS05440
Partner locus tags
RY67_RS05440
Partner old locus tags
RY67_1167
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235626017.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY67_RS05440Primary locus identifier stored in the genes table.
Old locus tagRY67_1167Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010411.1Sequence record reported by the local genomic context database.
Genomic interval1 288 572-1 289 177 nt606 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 288 572-1 289 177 ntGCF_001281305::NZ_CP010411.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281305::NZ_CP010411.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010411.1All displayed genes belong to this local TCS context.
Neighborhood span1 288 572-1 289 177 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 288 572 nt1 289 177 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RY67_RS05440GCF_001281305#RY67_RS05440
RRNarLCurrent focus
1 288 572-1 289 177 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002076025#B5785_RS03560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1684430
Simplified PFAM architecture for RROC_1684430
PFAM domain coverage: 159 / 221 aa (71.9%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-113] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1684430
- Positioned domains: Response_reg 9-113 ; Response_reg 9-113 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_002076025#B5785_RS03560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001281305
AssemblyASM128130v1 · Complete Genomehaploid
Genome composition2 578 115 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key