1 Response_reg#1
11-124 aa · 114 aa · 50.2% of protein
Raw token
Response_reg:11:4.14e-16:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM0305_RS01455
Response regulator NarL family
Bifidobacterium breve MCC 0305 · GCF_001264035
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001264035#BBM0305_RS01455Stable P2CS identifier used across views.
GenomeGCF_001264035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 227 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-221 aa · 58 aa · 25.6% of protein
Raw token
HTH_LUXR:164:4.92e-26:221:58:58- Raw architecture: Response_reg:11:4.14e-16:124:114:111#HTH_LUXR:164:4.92e-26:221:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001264035::NZ_AWFR01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span348168-348851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM0305_01490RefSeq proteinWP_003832924.1
Context group ID
GCF_001264035::NZ_AWFR01000001.1::G00002Context members
BBM0305_RS01455
Partner locus tags
BBM0305_RS01455
Partner old locus tags
BBM0305_01490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003832924.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L0LQF5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L0LQF5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM0305_RS01455Primary locus identifier stored in the genes table.
Old locus tagBBM0305_01490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWFR01000001.1Sequence record reported by the local genomic context database.
Genomic interval348 168-348 851 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span348 168-348 851 ntGCF_001264035::NZ_AWFR01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001264035::NZ_AWFR01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWFR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span348 168-348 851 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
348 168 nt348 851 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM0305_RS01455GCF_001264035#BBM0305_RS01455
RRNarLCurrent focus
348 168-348 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000220135#BBR_RS18645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1355028
Simplified PFAM architecture for RROC_1355028
PFAM domain coverage: 169 / 227 aa (74.4%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[166-221]
- Domain count: 2
- Matched identifier: RROC_1355028
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 166-221 ; GerE 166-221
Cluster members and taxonomy
Representative gene: GCF_000220135#BBR_RS18645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 961 · GCF_001264035
AssemblyASM126403v1 · Scaffoldhaploid
Genome composition2 286 838 bp · 59,0% GCBifidobacterium breve MCC 0305
Signal transduction countsGenes 21 · HK 8 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key