1 Response_reg#1
13-108 aa · 96 aa · 41.7% of protein
Raw token
Response_reg:13:0.00000000000797:108:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1128_RS06625
Response regulator NarL family
Bifidobacterium breve MCC 1128 · GCF_001263915
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001263915#BBM1128_RS06625Stable P2CS identifier used across views.
GenomeGCF_001263915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 230 aa (65.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-223 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:169:1.06e-16:223:55:58- Raw architecture: Response_reg:13:0.00000000000797:108:96:111#HTH_LUXR:169:1.06e-16:223:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001263915::NZ_AVQD01000011.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span92505-93197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1128_06855RefSeq proteinWP_052789452.1
Context group ID
GCF_001263915::NZ_AVQD01000011.1::G00010Context members
BBM1128_RS06625
Partner locus tags
BBM1128_RS06625
Partner old locus tags
BBM1128_06855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052789452.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN1M410Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN1M410_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1128_RS06625Primary locus identifier stored in the genes table.
Old locus tagBBM1128_06855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQD01000011.1Sequence record reported by the local genomic context database.
Genomic interval92 505-93 197 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 505-93 197 ntGCF_001263915::NZ_AVQD01000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263915::NZ_AVQD01000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQD01000011.1All displayed genes belong to this local TCS context.
Neighborhood span92 505-93 197 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 505 nt93 197 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM1128_RS06625GCF_001263915#BBM1128_RS06625
RRNarLCurrent focus
92 505-93 197 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263915#BBM1128_RS06625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1204880
Simplified PFAM architecture for RROC_1204880
PFAM domain coverage: 157 / 230 aa (68.3%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-115] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1204880
- Positioned domains: Response_reg 12-115 ; Response_reg 12-115 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_001263915#BBM1128_RS06625
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 6 over 6 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 965 · GCF_001263915
AssemblyASM126391v1 · Contighaploid
Genome composition2 480 222 bp · 59,0% GCBifidobacterium breve MCC 1128
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key