1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:9.13e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1128_RS06430
Histidine kinase, Classic
Bifidobacterium breve MCC 1128 · GCF_001263915
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263915#BBM1128_RS06430Stable P2CS identifier used across views.
GenomeGCF_001263915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:7.1e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:5.84e-21:612:148:109- Raw architecture: HAMP:252:9.13e-16:320:69:69#HisKA:332:7.1e-18:401:70:64#HATPase_c:465:5.84e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263915::NZ_AVQD01000011.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41717-44450Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1128_06655RefSeq proteinWP_052789462.1
Context group ID
GCF_001263915::NZ_AVQD01000011.1::G00009Context members
BBM1128_RS06425BBM1128_RS06430
Partner locus tags
BBM1128_RS06425BBM1128_RS06430
Partner old locus tags
BBM1128_06650BBM1128_06655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052789462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1128_RS06430Primary locus identifier stored in the genes table.
Old locus tagBBM1128_06655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQD01000011.1Sequence record reported by the local genomic context database.
Genomic interval42 525-44 450 nt1 926 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 717-44 450 ntGCF_001263915::NZ_AVQD01000011.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263915::NZ_AVQD01000011.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQD01000011.1All displayed genes belong to this local TCS context.
Neighborhood span41 717-44 450 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 717 nt44 450 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBM1128_RS06425GCF_001263915#BBM1128_RS06425
RROmpR
41 717-42 448 nt · Forward (+)
BBM1128_RS06430GCF_001263915#BBM1128_RS06430
HKClassicCurrent focus
42 525-44 450 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263915#BBM1128_RS06430The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0918537
Simplified PFAM architecture for HKOC_0918537
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0918537
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_001263915#BBM1128_RS06430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 965 · GCF_001263915
AssemblyASM126391v1 · Contighaploid
Genome composition2 480 222 bp · 59,0% GCBifidobacterium breve MCC 1128
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key