1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000158:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1128_RS04650
Histidine kinase, Classic
Bifidobacterium breve MCC 1128 · GCF_001263915
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263915#BBM1128_RS04650Stable P2CS identifier used across views.
GenomeGCF_001263915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:5.11e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000158:244:65:64#HATPase_c:308:5.11e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263915::NZ_AVQD01000008.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span186686-188804Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1128_04840RefSeq proteinWP_052789313.1
Context group ID
GCF_001263915::NZ_AVQD01000008.1::G00008Context members
BBM1128_RS04645BBM1128_RS04650
Partner locus tags
BBM1128_RS04645BBM1128_RS04650
Partner old locus tags
BBM1128_04835BBM1128_04840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052789313.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B0E1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B0E1_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1128_RS04650Primary locus identifier stored in the genes table.
Old locus tagBBM1128_04840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQD01000008.1Sequence record reported by the local genomic context database.
Genomic interval187 509-188 804 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span186 686-188 804 ntGCF_001263915::NZ_AVQD01000008.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263915::NZ_AVQD01000008.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span186 686-188 804 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 686 nt188 804 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBM1128_RS04645GCF_001263915#BBM1128_RS04645
RROmpR
186 686-187 390 nt · Reverse (-)
BBM1128_RS04650GCF_001263915#BBM1128_RS04650
HKClassicCurrent focus
187 509-188 804 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263915#BBM1128_RS04650The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2162463
Simplified PFAM architecture for HKOC_2162463
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2162463
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001263915#BBM1128_RS04650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 965 · GCF_001263915
AssemblyASM126391v1 · Contighaploid
Genome composition2 480 222 bp · 59,0% GCBifidobacterium breve MCC 1128
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key