1 HisKA_3#1
245-307 aa · 63 aa · 7.7% of protein
Raw token
HisKA_3:245:0.00000000000000182:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1128_RS01220
Histidine kinase, Classic
Bifidobacterium breve MCC 1128 · GCF_001263915
ClassHKTypeClassicLength822 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263915#BBM1128_RS01220Stable P2CS identifier used across views.
GenomeGCF_001263915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length822 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 822 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa822 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
348-439 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:348:0.000000000000311:439:108:1093 HisKA_3#3
698-768 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:698:0.0000104:768:71:68- Raw architecture: HisKA_3:245:0.00000000000000182:307:63:68#HATPase_c:348:0.000000000000311:439:108:109#HisKA_3:698:0.0000104:768:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263915::NZ_AVQD01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120661-123957Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1128_01270RefSeq proteinWP_080989104.1
Context group ID
GCF_001263915::NZ_AVQD01000003.1::G00004Context members
BBM1128_RS01215BBM1128_RS01220
Partner locus tags
BBM1128_RS01215BBM1128_RS01220
Partner old locus tags
BBM1128_01265BBM1128_01270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080989104.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B5K5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B5K5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1128_RS01220Primary locus identifier stored in the genes table.
Old locus tagBBM1128_01270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQD01000003.1Sequence record reported by the local genomic context database.
Genomic interval121 489-123 957 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 661-123 957 ntGCF_001263915::NZ_AVQD01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263915::NZ_AVQD01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span120 661-123 957 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 661 nt123 957 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBM1128_RS01215GCF_001263915#BBM1128_RS01215
RRNarL
120 661-121 467 nt · Reverse (-)
BBM1128_RS01220GCF_001263915#BBM1128_RS01220
HKClassicCurrent focus
121 489-123 957 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263915#BBM1128_RS01220The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0527617
Simplified PFAM architecture for HKOC_0527617
PFAM domain coverage: 428 / 822 aa (52.1%)
1 aa822 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[14-155] | HisKA_3[245-308] | HATPase_c[348-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0527617
- Positioned domains: DUF7134 14-155 ; HisKA_3 245-308 ; HATPase_c 348-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_001263915#BBM1128_RS01220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 965 · GCF_001263915
AssemblyASM126391v1 · Contighaploid
Genome composition2 480 222 bp · 59,0% GCBifidobacterium breve MCC 1128
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key