1 HisKA#1
180-244 aa · 65 aa · 14.8% of protein
Raw token
HisKA:180:0.000000000017:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1114_RS04470
Histidine kinase, Classic
Bifidobacterium breve MCC 1114 · GCF_001263855
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263855#BBM1114_RS04470Stable P2CS identifier used across views.
GenomeGCF_001263855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 438 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 25.8% of protein
Raw token
HATPase_c:308:1.16e-29:420:113:109- Raw architecture: HisKA:180:0.000000000017:244:65:64#HATPase_c:308:1.16e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263855::NZ_AVQC01000009.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135324-137463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1114_04610RefSeq proteinWP_052790449.1
Context group ID
GCF_001263855::NZ_AVQC01000009.1::G00003Context members
BBM1114_RS04470BBM1114_RS04475
Partner locus tags
BBM1114_RS04470BBM1114_RS04475
Partner old locus tags
BBM1114_04610BBM1114_04615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052790449.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7D0H5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7D0H5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1114_RS04470Primary locus identifier stored in the genes table.
Old locus tagBBM1114_04610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQC01000009.1Sequence record reported by the local genomic context database.
Genomic interval135 324-136 640 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 324-137 463 ntGCF_001263855::NZ_AVQC01000009.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263855::NZ_AVQC01000009.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQC01000009.1All displayed genes belong to this local TCS context.
Neighborhood span135 324-137 463 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 324 nt137 463 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBM1114_RS04470GCF_001263855#BBM1114_RS04470
HKClassicCurrent focus
135 324-136 640 nt · Forward (+)
BBM1114_RS04475GCF_001263855#BBM1114_RS04475
RROmpR
136 759-137 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263855#BBM1114_RS04470The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093632
Simplified PFAM architecture for HKOC_2093632
PFAM domain coverage: 176 / 438 aa (40.2%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2093632
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001263855#BBM1114_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 964 · GCF_001263855
AssemblyASM126385v1 · Contighaploid
Genome composition2 487 280 bp · 59,0% GCBifidobacterium breve MCC 1114
Signal transduction countsGenes 21 · HK 8 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key