1 HAMP#1
127-197 aa · 71 aa · 16.5% of protein
Raw token
HAMP:127:0.00000000228:197:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBRI4_RS08695
Histidine kinase, Classic
Bifidobacterium breve · GCF_001189355
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001189355#BBRI4_RS08695Stable P2CS identifier used across views.
GenomeGCF_001189355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 431 aa (54.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation3 items
2 HisKA#2
202-266 aa · 65 aa · 15.1% of protein
Raw token
HisKA:202:0.00000000000968:266:65:643 HATPase_c#3
313-409 aa · 97 aa · 22.5% of protein
Raw token
HATPase_c:313:0.0000000000249:409:102:109- Raw architecture: HAMP:127:0.00000000228:197:71:69#HisKA:202:0.00000000000968:266:65:64#HATPase_c:313:0.0000000000249:409:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001189355::NZ_LFII01000020.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266468-268422Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBRI4_20c217RefSeq proteinWP_050825121.1
Context group ID
GCF_001189355::NZ_LFII01000020.1::G00010Context members
BBRI4_RS08690BBRI4_RS08695
Partner locus tags
BBRI4_RS08690BBRI4_RS08695
Partner old locus tags
BBRI4_20c216BBRI4_20c217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_050825121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBRI4_RS08695Primary locus identifier stored in the genes table.
Old locus tagBBRI4_20c217Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LFII01000020.1Sequence record reported by the local genomic context database.
Genomic interval267 127-268 422 nt1 296 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span266 468-268 422 ntGCF_001189355::NZ_LFII01000020.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001189355::NZ_LFII01000020.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LFII01000020.1All displayed genes belong to this local TCS context.
Neighborhood span266 468-268 422 nt1 955 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 468 nt268 422 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBRI4_RS08690GCF_001189355#BBRI4_RS08690
RROmpR
266 468-267 130 nt · Forward (+)
BBRI4_RS08695GCF_001189355#BBRI4_RS08695
HKClassicCurrent focus
267 127-268 422 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001189355#BBRI4_RS08695The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2162444
Simplified PFAM architecture for HKOC_2162444
PFAM domain coverage: 162 / 431 aa (37.6%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-266] | HATPase_c[315-411]
- Domain count: 2
- Matched identifier: HKOC_2162444
- Positioned domains: HisKA 202-266 ; HATPase_c 315-411
Cluster members and taxonomy
Representative gene: GCF_001189355#BBRI4_RS08695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001189355
AssemblyassBREI4 · Contighaploid
Genome composition2 426 720 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key