1 HisKA#1
199-258 aa · 60 aa · 14.4% of protein
Raw token
HisKA:199:0.00000000117:258:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF1296T_RS07740
Histidine kinase, Classic
Clostridioides difficile ATCC 9689 = DSM 1296 · GCF_001077535
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001077535#CDIF1296T_RS07740Stable P2CS identifier used across views.
GenomeGCF_001077535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 417 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-410 aa · 107 aa · 25.7% of protein
Raw token
HATPase_c:304:2.11e-21:410:107:109- Raw architecture: HisKA:199:0.00000000117:258:60:64#HATPase_c:304:2.11e-21:410:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001077535::NZ_CP011968.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1581656-1583591Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF1296T_01535RefSeq proteinWP_018112764.1
Context group ID
GCF_001077535::NZ_CP011968.1::G00020Context members
CDIF1296T_RS07735CDIF1296T_RS07740
Partner locus tags
CDIF1296T_RS07735CDIF1296T_RS07740
Partner old locus tags
CDIF1296T_01534CDIF1296T_01535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_018112764.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF1296T_RS07740Primary locus identifier stored in the genes table.
Old locus tagCDIF1296T_01535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP011968.1Sequence record reported by the local genomic context database.
Genomic interval1 582 338-1 583 591 nt1 254 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 581 656-1 583 591 ntGCF_001077535::NZ_CP011968.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001077535::NZ_CP011968.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP011968.1All displayed genes belong to this local TCS context.
Neighborhood span1 581 656-1 583 591 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 581 656 nt1 583 591 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF1296T_RS07735GCF_001077535#CDIF1296T_RS07735
RROmpR
1 581 656-1 582 360 nt · Forward (+)
CDIF1296T_RS07740GCF_001077535#CDIF1296T_RS07740
HKClassicCurrent focus
1 582 338-1 583 591 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293471
Simplified PFAM architecture for HKOC_2293471
PFAM domain coverage: 169 / 417 aa (40.5%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-258] | HATPase_c[305-410]
- Domain count: 2
- Matched identifier: HKOC_2293471
- Positioned domains: HisKA 196-258 ; HATPase_c 305-410
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 308 · GCF_001077535
AssemblyASM107753v2 · Complete Genomehaploid
Genome composition4 154 879 bp · 29,0% GCClostridioides difficile ATCC 9689 = DSM 1296
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key