1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.000000000000823:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN163_RS03215
Histidine kinase, Classic
Clostridioides difficile T5 · GCF_001050575
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001050575#BN163_RS03215Stable P2CS identifier used across views.
GenomeGCF_001050575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 468 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-465 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:357:1.94e-18:465:110:109- Raw architecture: HisKA:245:0.000000000000823:309:65:64#HATPase_c:357:1.94e-18:465:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001050575::NZ_HF677321.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3089-5253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN163_480006RefSeq proteinWP_003418198.1
Context group ID
GCF_001050575::NZ_HF677321.1::G00010Context members
BN163_RS03210BN163_RS03215
Partner locus tags
BN163_RS03210BN163_RS03215
Partner old locus tags
BN163_480005BN163_480006
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003418198.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0Q3Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0Q3_CLODIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN163_RS03215Primary locus identifier stored in the genes table.
Old locus tagBN163_480006Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF677321.1Sequence record reported by the local genomic context database.
Genomic interval3 847-5 253 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 089-5 253 ntGCF_001050575::NZ_HF677321.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001050575::NZ_HF677321.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF677321.1All displayed genes belong to this local TCS context.
Neighborhood span3 089-5 253 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 089 nt5 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN163_RS03210GCF_001050575#BN163_RS03210
RROmpR
3 089-3 802 nt · Forward (+)
BN163_RS03215GCF_001050575#BN163_RS03215
HKClassicCurrent focus
3 847-5 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0203390Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737648
Simplified PFAM architecture for HKOC_1737648
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737648
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0203390
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 296 total members. Page 1 / 6.
GCF_000155065#QAE_RS0203390 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 059 · GCF_001050575
AssemblyASM105057v1 · Scaffoldhaploid
Genome composition3 961 322 bp · 29,0% GCClostridioides difficile T5
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key