1 HAMP#1
166-239 aa · 74 aa · 15.6% of protein
Raw token
HAMP:166:0.00000000887:239:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN163_RS01975
Histidine kinase, Classic
Clostridioides difficile T5 · GCF_001050575
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001050575#BN163_RS01975Stable P2CS identifier used across views.
GenomeGCF_001050575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 474 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
250-315 aa · 66 aa · 13.9% of protein
Raw token
HisKA:250:0.00000000411:315:66:643 HATPase_c#3
365-471 aa · 107 aa · 22.6% of protein
Raw token
HATPase_c:365:2.99e-25:471:107:109- Raw architecture: HAMP:166:0.00000000887:239:74:69#HisKA:250:0.00000000411:315:66:64#HATPase_c:365:2.99e-25:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001050575::NZ_HF677297.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20770-22905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN163_240025RefSeq proteinWP_003417591.1
Context group ID
GCF_001050575::NZ_HF677297.1::G00004Context members
BN163_RS01975BN163_RS01980
Partner locus tags
BN163_RS01975BN163_RS01980
Partner old locus tags
BN163_240025BN163_240026
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417591.1Primary protein accession used for annex mappings.
UniProt accessionD5Q047Primary UniProt accession resolved in the annex database.
UniProt IDD5Q047_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN163_RS01975Primary locus identifier stored in the genes table.
Old locus tagBN163_240025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF677297.1Sequence record reported by the local genomic context database.
Genomic interval20 770-22 194 nt1 425 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 770-22 905 ntGCF_001050575::NZ_HF677297.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001050575::NZ_HF677297.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF677297.1All displayed genes belong to this local TCS context.
Neighborhood span20 770-22 905 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 770 nt22 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN163_RS01975GCF_001050575#BN163_RS01975
HKClassicCurrent focus
20 770-22 194 nt · Reverse (-)
BN163_RS01980GCF_001050575#BN163_RS01980
RROmpR
22 213-22 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202395Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1674187
Simplified PFAM architecture for HKOC_1674187
PFAM domain coverage: 222 / 474 aa (46.8%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[189-238] | HisKA[251-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1674187
- Positioned domains: HAMP 189-238 ; HisKA 251-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 059 · GCF_001050575
AssemblyASM105057v1 · Scaffoldhaploid
Genome composition3 961 322 bp · 29,0% GCClostridioides difficile T5
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key