1 HAMP#1
58-126 aa · 69 aa · 19.2% of protein
Raw token
HAMP:58:0.00000000259:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU70_RS29150
Histidine kinase, Classic
Bacillus mycoides · GCF_001044935
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044935#TU70_RS29150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 359 aa (64.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-201 aa · 64 aa · 17.8% of protein
Raw token
HisKA:138:0.0000000000000192:201:64:643 HATPase_c#3
250-348 aa · 99 aa · 27.6% of protein
Raw token
HATPase_c:250:1.49e-16:348:99:109- Raw architecture: HAMP:58:0.00000000259:126:69:69#HisKA:138:0.0000000000000192:201:64:64#HATPase_c:250:1.49e-16:348:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044935::NZ_LABT01000043.1::G00078
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span158337-160099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU70_29150RefSeq proteinWP_016126980.1
Context group ID
GCF_001044935::NZ_LABT01000043.1::G00078Context members
TU70_RS29145TU70_RS29150
Partner locus tags
TU70_RS29145TU70_RS29150
Partner old locus tags
TU70_29145TU70_29150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016126980.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KRS0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KRS0_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU70_RS29150Primary locus identifier stored in the genes table.
Old locus tagTU70_29150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABT01000043.1Sequence record reported by the local genomic context database.
Genomic interval159 020-160 099 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span158 337-160 099 ntGCF_001044935::NZ_LABT01000043.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044935::NZ_LABT01000043.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABT01000043.1All displayed genes belong to this local TCS context.
Neighborhood span158 337-160 099 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 337 nt160 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU70_RS29145GCF_001044935#TU70_RS29145
RROmpR
158 337-159 023 nt · Forward (+)
TU70_RS29150GCF_001044935#TU70_RS29150
HKClassicCurrent focus
159 020-160 099 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS11070Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753213
Simplified PFAM architecture for HKOC_2753213
PFAM domain coverage: 211 / 359 aa (58.8%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-354]
- Domain count: 3
- Matched identifier: HKOC_2753213
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-354
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001044935
AssemblyASM104493v1 · Scaffoldhaploid
Genome composition6 096 796 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 137 · HK 75 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key