1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:4.36e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU70_RS10365
Response regulator OmpR family
Bacillus mycoides · GCF_001044935
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044935#TU70_RS10365Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 225 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 34.7% of protein
Raw token
Trans_reg_C:143:1.39e-28:220:78:77- Raw architecture: Response_reg:4:4.36e-37:113:111:111#Trans_reg_C:143:1.39e-28:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044935::NZ_LABT01000015.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108866-110925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU70_10350RefSeq proteinWP_016126555.1
Context group ID
GCF_001044935::NZ_LABT01000015.1::G00036Context members
TU70_RS10360TU70_RS10365
Partner locus tags
TU70_RS10360TU70_RS10365
Partner old locus tags
TU70_10345TU70_10350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016126555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU70_RS10365Primary locus identifier stored in the genes table.
Old locus tagTU70_10350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABT01000015.1Sequence record reported by the local genomic context database.
Genomic interval110 248-110 925 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 866-110 925 ntGCF_001044935::NZ_LABT01000015.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044935::NZ_LABT01000015.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABT01000015.1All displayed genes belong to this local TCS context.
Neighborhood span108 866-110 925 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 866 nt110 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU70_RS10360GCF_001044935#TU70_RS10360
HKClassic
108 866-110 236 nt · Reverse (-)
TU70_RS10365GCF_001044935#TU70_RS10365
RROmpRCurrent focus
110 248-110 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS02585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1465968
Simplified PFAM architecture for RROC_1465968
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1465968
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS02585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001044935
AssemblyASM104493v1 · Scaffoldhaploid
Genome composition6 096 796 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 137 · HK 75 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key