Gene detail

TU70_RS05545

Histidine kinase, Hybrid

Bacillus mycoides · GCF_001044935

Open genome Open selected cluster RefSeq

ClassHKTypeHybridLength529 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_001044935#TU70_RS05545Stable P2CS identifier used across views.

GenomeGCF_001044935Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1068873Run 6 · 21 sequences · id 100% · cov 80%

External referencesWP_048516884.1 · MIST4 TU70_RS05545RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_cResponse_reg

Protein length529 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage263 / 529 aa (49.7%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_c,1 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa529 aa

Domain-by-domain annotation3 items

1 HisKA_3#1

183-247 aa · 65 aa · 12.3% of protein

Raw tokenHisKA_3:183:0.000000000000295:247:68:68

2 HATPase_c#2

289-374 aa · 86 aa · 16.3% of protein

Raw tokenHATPase_c:289:8.5e-17:374:104:109

3 Response_reg#3

384-495 aa · 112 aa · 21.2% of protein

Raw tokenResponse_reg:384:3.35e-29:495:112:111

Raw architecture: HisKA_3:183:0.000000000000295:247:68:68#HATPase_c:289:8.5e-17:374:104:109#Response_reg:384:3.35e-29:495:112:111
Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_001044935::NZ_LABT01000005.1::G00020

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span735037-736625Genomic interval covered by the local TCS group.

Identifiers

Old locus tagTU70_05535RefSeq proteinWP_048516884.1

Context group IDGCF_001044935::NZ_LABT01000005.1::G00020

Context members

TU70_RS05545

Partner locus tags

TU70_RS05545

Partner old locus tags

TU70_05535

Partner protein IDs

WP_048516884.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_048516884.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagTU70_RS05545Primary locus identifier stored in the genes table.

Old locus tagTU70_05535Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_LABT01000005.1Sequence record reported by the local genomic context database.

Genomic interval735 037-736 625 nt1 589 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span735 037-736 625 ntGCF_001044935::NZ_LABT01000005.1::G00020

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_001044935::NZ_LABT01000005.1::G00020

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_LABT01000005.1All displayed genes belong to this local TCS context.

Neighborhood span735 037-736 625 nt1 589 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

735 037 nt736 625 nt

+-TU70_RS05545

Neighborhood gene cards

1 gene in the current local neighborhood.

TU70_RS05545GCF_001044935#TU70_RS05545

HKHybridCurrent focus

735 037-736 625 nt · Forward (+)

Old locus TU70_05535RefSeq WP_048516884.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1068873HK

Run 621 sequencesid 100%cov 80%

PFAM HisKA_3 + HATPase_c + Response_reg + GerE

Representative GCF_000517985#C174_RS05485

Selected clusterHKOC_1068873Run 6 · HK · 21 sequences

Representative sequenceGCF_000517985#C174_RS05485Use this link to inspect the representative gene detail.

PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1068873

Simplified PFAM architecture for HKOC_1068873

PFAM domain coverage: 313 / 597 aa (52.4%)

1 aa597 aa

HisKA_3HATPase_cResponse_regGerE

Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
Raw architecture: HisKA_3[183-245] | HATPase_c[289-373] | Response_reg[384-494] | GerE[537-590]
Domain count: 4
Matched identifier: HKOC_1068873
Positioned domains: HisKA_3 183-245 ; HATPase_c 289-373 ; Response_reg 384-494 ; GerE 537-590

Cluster members and taxonomy

Representative gene: GCF_000517985#C174_RS05485

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 405 · GCF_001044935

AssemblyASM104493v1 · Scaffoldhaploid

Genome composition6 096 796 bp · 35,5% GCBacillus mycoides

Signal transduction countsGenes 137 · HK 75 · RR 62CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key