1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.00000146:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU70_RS02835
Histidine kinase, Classic
Bacillus mycoides · GCF_001044935
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044935#TU70_RS02835Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.00000000608:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.00000000155:327:103:109- Raw architecture: HAMP:55:0.00000146:122:71:69#HisKA:137:0.00000000608:190:54:64#HATPase_c:246:0.00000000155:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044935::NZ_LABT01000005.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202301-203970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU70_02835RefSeq proteinWP_016127201.1
Context group ID
GCF_001044935::NZ_LABT01000005.1::G00011Context members
TU70_RS02830TU70_RS02835
Partner locus tags
TU70_RS02830TU70_RS02835
Partner old locus tags
TU70_02830TU70_02835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016127201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU70_RS02835Primary locus identifier stored in the genes table.
Old locus tagTU70_02835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABT01000005.1Sequence record reported by the local genomic context database.
Genomic interval202 969-203 970 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 301-203 970 ntGCF_001044935::NZ_LABT01000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044935::NZ_LABT01000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABT01000005.1All displayed genes belong to this local TCS context.
Neighborhood span202 301-203 970 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 301 nt203 970 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU70_RS02830GCF_001044935#TU70_RS02830
RROmpR
202 301-202 972 nt · Forward (+)
TU70_RS02835GCF_001044935#TU70_RS02835
HKClassicCurrent focus
202 969-203 970 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS13810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2851553
Simplified PFAM architecture for HKOC_2851553
PFAM domain coverage: 133 / 333 aa (39.9%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-325]
- Domain count: 2
- Matched identifier: HKOC_2851553
- Positioned domains: HisKA 137-190 ; HATPase_c 247-325
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS13810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001044935
AssemblyASM104493v1 · Scaffoldhaploid
Genome composition6 096 796 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 137 · HK 75 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key