1 HisKA_3#1
194-260 aa · 67 aa · 16.9% of protein
Raw token
HisKA_3:194:1.94e-20:260:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS09065
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS09065Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 397 aa (39.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
300-388 aa · 89 aa · 22.4% of protein
Raw token
HATPase_c:300:1.89e-16:388:107:109- Raw architecture: HisKA_3:194:1.94e-20:260:67:68#HATPase_c:300:1.89e-16:388:107:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000021.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36368-38214Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_09070RefSeq proteinWP_048542908.1
Context group ID
GCF_001044745::NZ_LABO01000021.1::G00029Context members
TU65_RS09060TU65_RS09065
Partner locus tags
TU65_RS09060TU65_RS09065
Partner old locus tags
TU65_09065TU65_09070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048542908.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS09065Primary locus identifier stored in the genes table.
Old locus tagTU65_09070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000021.1Sequence record reported by the local genomic context database.
Genomic interval37 021-38 214 nt1 194 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 368-38 214 ntGCF_001044745::NZ_LABO01000021.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000021.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000021.1All displayed genes belong to this local TCS context.
Neighborhood span36 368-38 214 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 368 nt38 214 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS09060GCF_001044745#TU65_RS09060
RRNarL
36 368-37 024 nt · Reverse (-)
TU65_RS09065GCF_001044745#TU65_RS09065
HKClassicCurrent focus
37 021-38 214 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS09065The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2470516
Simplified PFAM architecture for HKOC_2470516
PFAM domain coverage: 153 / 397 aa (38.5%)
1 aa397 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[194-259] | HATPase_c[301-387]
- Domain count: 2
- Matched identifier: HKOC_2470516
- Positioned domains: HisKA_3 194-259 ; HATPase_c 301-387
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS09065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key