1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:4.89e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS08650
Response regulator OmpR family
Bacillus wiedmannii · GCF_001044745
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS08650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:154:2.19e-35:229:76:77- Raw architecture: Response_reg:6:4.89e-39:115:111:111#Trans_reg_C:154:2.19e-35:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000020.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span557426-559978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_08655RefSeq proteinWP_000971866.1
Context group ID
GCF_001044745::NZ_LABO01000020.1::G00028Context members
TU65_RS08645TU65_RS08650
Partner locus tags
TU65_RS08645TU65_RS08650
Partner old locus tags
TU65_08650TU65_08655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000971866.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H0TIL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H0TIL8_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS08650Primary locus identifier stored in the genes table.
Old locus tagTU65_08655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000020.1Sequence record reported by the local genomic context database.
Genomic interval559 271-559 978 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span557 426-559 978 ntGCF_001044745::NZ_LABO01000020.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000020.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000020.1All displayed genes belong to this local TCS context.
Neighborhood span557 426-559 978 nt2 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
557 426 nt559 978 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS08645GCF_001044745#TU65_RS08645
HKClassic
557 426-559 267 nt · Reverse (-)
TU65_RS08650GCF_001044745#TU65_RS08650
RROmpRCurrent focus
559 271-559 978 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS25785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016789
Simplified PFAM architecture for RROC_1016789
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1016789
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS25785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key