1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.00000000000113:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS08415
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS08415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 523 aa (79.0%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
203-318 aa · 116 aa · 22.2% of protein
Raw token
GAF_3:203:0.0000000000155:318:123:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:3.57e-22:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.00000000519:523:106:109- Raw architecture: GAF:29:0.00000000000113:166:141:133#GAF_3:203:0.0000000000155:318:123:129#HisKA_3:333:3.57e-22:400:68:68#HATPase_c:433:0.00000000519:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000020.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span501729-503968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_08420RefSeq proteinWP_048542781.1
Context group ID
GCF_001044745::NZ_LABO01000020.1::G00025Context members
TU65_RS08410TU65_RS08415
Partner locus tags
TU65_RS08410TU65_RS08415
Partner old locus tags
TU65_08415TU65_08420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048542781.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS08415Primary locus identifier stored in the genes table.
Old locus tagTU65_08420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000020.1Sequence record reported by the local genomic context database.
Genomic interval502 397-503 968 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span501 729-503 968 ntGCF_001044745::NZ_LABO01000020.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000020.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000020.1All displayed genes belong to this local TCS context.
Neighborhood span501 729-503 968 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
501 729 nt503 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS08410GCF_001044745#TU65_RS08410
RRNarL
501 729-502 376 nt · Reverse (-)
TU65_RS08415GCF_001044745#TU65_RS08415
HKClassicCurrent focus
502 397-503 968 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS08415The current gene is the representative for this cluster.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1380279
Simplified PFAM architecture for HKOC_1380279
PFAM domain coverage: 413 / 523 aa (79.0%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[203-318] | HisKA_3[333-400] | HATPase_c[434-523]
- Domain count: 4
- Matched identifier: HKOC_1380279
- Positioned domains: GAF_2 28-166 ; GAF_3 203-318 ; HisKA_3 333-400 ; HATPase_c 434-523
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS08415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key