1 HAMP#1
161-229 aa · 69 aa · 15.0% of protein
Raw token
HAMP:161:0.00000000000000307:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS03800
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS03800Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 461 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.3% of protein
Raw token
HisKA:234:0.00000000000000621:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:346:1.67e-36:454:109:109- Raw architecture: HAMP:161:0.00000000000000307:229:69:69#HisKA:234:0.00000000000000621:299:66:64#HATPase_c:346:1.67e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000011.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span121946-124020Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_03800RefSeq proteinWP_048541736.1
Context group ID
GCF_001044745::NZ_LABO01000011.1::G00014Context members
TU65_RS03800TU65_RS03805
Partner locus tags
TU65_RS03800TU65_RS03805
Partner old locus tags
TU65_03800TU65_03805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048541736.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS03800Primary locus identifier stored in the genes table.
Old locus tagTU65_03800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000011.1Sequence record reported by the local genomic context database.
Genomic interval121 946-123 331 nt1 386 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 946-124 020 ntGCF_001044745::NZ_LABO01000011.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000011.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span121 946-124 020 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 946 nt124 020 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS03800GCF_001044745#TU65_RS03800
HKClassicCurrent focus
121 946-123 331 nt · Reverse (-)
TU65_RS03805GCF_001044745#TU65_RS03805
RROmpR
123 343-124 020 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS03800The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1821481
Simplified PFAM architecture for HKOC_1821481
PFAM domain coverage: 226 / 461 aa (49.0%)
1 aa461 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1821481
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS03800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key